To improve the learnability of deep learning models, various techniques have been proposed.

With its strong generalizability, deep learning has been pervasively applied in machine learning.

Graph contrastive learning (GCL) has recently emerged as a new concept which allows for capitalizing on the strengths of graph neural networks (GNNs) to learn rich representations in a wide variety of applications which involve abundant unlabeled information. However, existing GCL approaches largely tend to overlook the important latent information on higher-order graph substructures. We address this limitation by introducing the concepts of topological invariance and extended persistence on graphs to GCL. In particular, we propose a new contrastive mode which targets topological representations of the two augmented views from the same graph, yielded by extracting latent shape properties of the graph at multiple resolutions. Along with the extended topological layer, we introduce a new extended persistence summary, namely, extended persistence landscapes (EPL) and derive its theoretical stability guarantees. Our extensive numerical results on biological, chemical, and social interaction graphs show that the new Topological Graph Contrastive Learning (TopoGCL) model delivers significant performance gains in unsupervised graph classification for 11 out of 12 considered datasets and also exhibits robustness under noisy scenarios.

Directed acyclic graph (DAG) has been widely employed to represent directional relationships among a set of collected nodes. Yet, the available data in one single study is often limited for accurate DAG reconstruction, whereas heterogeneous data may be collected from multiple relevant studies. It remains an open question how to pool the heterogeneous data together for better DAG structure reconstruction in the target study. In this paper, we first introduce a novel set of structural similarity measures for DAG and then present a transfer DAG learning framework by effectively leveraging information from auxiliary DAGs of different levels of similarities. Our theoretical analysis shows substantial improvement in terms of DAG reconstruction in the target study, even when no auxiliary DAG is overall similar to the target DAG, which is in sharp contrast to most existing transfer learning methods. The advantage of the proposed transfer DAG learning is also supported by extensive numerical experiments on both synthetic data and multi-site brain functional connectivity network data.

Recent advances in Large Language Models (LLMs) have enabled the generation of open-ended high-quality texts, that are non-trivial to distinguish from human-written texts. We refer to such LLM-generated texts as \emph{deepfake texts}. There are currently over 11K text generation models in the huggingface model repo. As such, users with malicious intent can easily use these open-sourced LLMs to generate harmful texts and misinformation at scale. To mitigate this problem, a computational method to determine if a given text is a deepfake text or not is desired--i.e., Turing Test (TT). In particular, in this work, we investigate the more general version of the problem, known as \emph{Authorship Attribution (AA)}, in a multi-class setting--i.e., not only determining if a given text is a deepfake text or not but also being able to pinpoint which LLM is the author. We propose \textbf{TopRoBERTa} to improve existing AA solutions by capturing more linguistic patterns in deepfake texts by including a Topological Data Analysis (TDA) layer in the RoBERTa model. We show the benefits of having a TDA layer when dealing with noisy, imbalanced, and heterogeneous datasets, by extracting TDA features from the reshaped $pooled\_output$ of RoBERTa as input. We use RoBERTa to capture contextual representations (i.e., semantic and syntactic linguistic features), while using TDA to capture the shape and structure of data (i.e., linguistic structures). Finally, \textbf{TopRoBERTa}, outperforms the vanilla RoBERTa in 2/3 datasets, achieving up to 7\% increase in Macro F1 score.

Graph neural networks (GNNs) have demonstrated a significant success in various graph learning tasks, from graph classification to anomaly detection. There recently has emerged a number of approaches adopting a graph pooling operation within GNNs, with a goal to preserve graph attributive and structural features during the graph representation learning. However, most existing graph pooling operations suffer from the limitations of relying on node-wise neighbor weighting and embedding, which leads to insufficient encoding of rich topological structures and node attributes exhibited by real-world networks. By invoking the machinery of persistent homology and the concept of landmarks, we propose a novel topological pooling layer and witness complex-based topological embedding mechanism that allow us to systematically integrate hidden topological information at both local and global levels. Specifically, we design new learnable local and global topological representations Wit-TopoPool which allow us to simultaneously extract rich discriminative topological information from graphs. Experiments on 11 diverse benchmark datasets against 18 baseline models in conjunction with graph classification tasks indicate that Wit-TopoPool significantly outperforms all competitors across all datasets.

Various topological techniques and tools have been applied to neural networks in terms of network complexity, explainability, and performance. One fundamental assumption of this line of research is the existence of a global (Euclidean) coordinate system upon which the topological layer is constructed. Despite promising results, such a \textit{topologization} method has yet to be widely adopted because the parametrization of a topologization layer takes a considerable amount of time and more importantly, lacks a theoretical foundation without which the performance of the neural network only achieves suboptimal performance. This paper proposes a learnable topological layer for neural networks without requiring a Euclidean space; Instead, the proposed construction requires nothing more than a general metric space except for an inner product, i.e., a Hilbert space. Accordingly, the according parametrization for the proposed topological layer is free of user-specified hyperparameters, which precludes the costly parametrization stage and the corresponding possibility of suboptimal networks.

Acyclic model, often depicted as a directed acyclic graph (DAG), has been widely employed to represent directional causal relations among collected nodes. In this article, we propose an efficient method to learn linear non-Gaussian DAG in high dimensional cases, where the noises can be of any continuous non-Gaussian distribution. This is in sharp contrast to most existing DAG learning methods assuming Gaussian noise with additional variance assumptions to attain exact DAG recovery. The proposed method leverages a novel concept of topological layer to facilitate the DAG learning. Particularly, we show that the topological layers can be exactly reconstructed in a bottom-up fashion, and the parent-child relations among nodes in each layer can also be consistently established. More importantly, the proposed method does not require the faithfulness or parental faithfulness assumption which has been widely assumed in the literature of DAG learning. Its advantage is also supported by the numerical comparison against some popular competitors in various simulated examples as well as a real application on the global spread of COVID-19.